SysteMHC v.231201
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Showing details for project SYSMHC00016



SampleID NumReplicates Organism TissueType CellType MHCAllele
SampleID NumReplicates Organism TissueType CellType MHCAllele
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_03_Q3_PAT2 1 Human no allele
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_03_Qp2_Bcell_38 1 Human DRB1_0401
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_04_Q3_PAT3 1 Human no allele
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_04_Qp2_ajy_th_HLA-DR_1 1 Human DRB1_0401
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_05_Q3_PAT4 1 Human no allele
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_05_Qp2_BAL_6 1 Human no allele
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_05_Qp2_ajy_th_HLA-DR_2 1 Human DRB1_0401
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_05_Qp2_ajy_th_HLA-DR_3 1 Human DRB1_0401
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_06_Qp2_Bcell_36 1 Human DRB1_0401
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_07_Qp2_BAL_3 1 Human no allele
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_07_Qp2_ajy_th_HLA-DR_7 1 Human DRB1_0401
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_08_Qp2_BAL_1 1 Human no allele
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_09_Qp2_Bcell_34 1 Human DRB1_0401
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_09_Qp2_ajy_th_HLA-DR_10 1 Human DRB1_0401
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_09_Qp2_ajy_th_HLA-DR_14 1 Human DRB1_0401
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_10_Qp2_BAL_4 1 Human no allele
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_12_Qp2_ajy_th_HLA-DR_19 1 Human DRB1_0401
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_13_Q3_PAT5_rep1 1 Human no allele
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_13_Qp2_ajy_th_HLA-DR_20 1 Human DRB1_0401
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_14_Q3_PAT5_rep2 1 Human no allele
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_15_Qp2_ajy_th_HLA-DR_22 1 Human DRB1_0401
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_16_Qp2_ajy_th_HLA-DR_24 1 Human DRB1_0401
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_17_Qp2_ajy_th_HLA-DR_26 1 Human DRB1_0401
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_19_Qp2_ajy_th_HLA-DR_31 1 Human DRB1_0401
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_68_Q3_PAT6_10_rep2 1 Human no allele
SYSMHC00016_Heydert_161006_Ytterberg_Sweden_70_Q3_PAT6_50 1 Human no allele



Detailed view of sample SYSMHC00016_Heydert_161006_Ytterberg_Sweden_13_Q3_PAT5_rep1



ID SampleID RawFileName Organism Process Tissue Type Cell Type Culture Conditions Disease State Comments MHCClass MHCAllele PubMed ID Peptide Isolation Method Antibody Mass Spectrometer LC System iRT Peptides Acquisition Mode Fragmentation Method Gradient Gradient Length Flow Rate Replicate Number
ID SampleID RawFileName Organism Process Tissue_Type Cell_Type Culture_Conditions Disease_State Comments MHCClass MHCAllele PubMed_ID Peptide Isolation_Method Antibody Mass_Spectrometer LC_System iRT_Peptides Acquisition_Mode Fragmentation_Method Gradient Gradient_Length Flow_Rate Replicate_Number
SYSMHC00016 SYSMHC00016_Heydert_161006_Ytterberg_Sweden_13_Q3_PAT5_rep1 SYSMHC00016_20130317_13_Q3_PAT5_rep1.raw Human In vivo Macrophage living tissue Idiopatic pulmory fibrosis Mainly macrophage class II no allele no allele 27452731 native Immunoaffinity L243 Q-Exactive Easy-nLC (Thermo Fisher Scientific) no DDA HCD The separation was achieved using ACN/water gradients (buffer A: 2 % ACN, 0.1 % FA buffer B: 98 % ACN, 0.1 % FA) of 3-35 % B over 35 min, followed by a 35-95 % ACN gradient over 5 minutes and 95 % ACN for 8 minutes. 40 3 nl/min 1